Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase. (475 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2.
  
  
 0.934
EES63293.1
Penicillin-binding protein, 1A family.
     
 0.926
EES64222.1
Serine-type D-Ala-D-Ala carboxypeptidase; Belongs to the peptidase S11 family.
     
 0.926
pbpC
Penicillin-binding protein 1C.
   
 
 0.919
EES62788.1
Ankyrin repeat protein.
   
 
 0.639
EES62866.1
Ankyrin repeat protein.
   
 
 0.639
EES64495.1
LD-carboxypeptidase.
 
   
 0.475
EES64089.2
Phospholipase, patatin family.
       0.458
EES62743.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
    0.422
EES64193.1
Aldose 1-epimerase.
  
    0.422
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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