Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EES63865.1TIGR00268 family protein. (302 aa)    
Predicted Functional Partners:
EES63867.1
Hypothetical protein.
 
  
 0.987
EES63866.1
TIGR00299 family protein; Belongs to the LarC family.
  
 0.980
EES63864.1
Cobalamin biosynthesis protein CbiM.
 
    0.933
cbiQ
Cobalt ABC transporter, permease protein CbiQ.
 
    0.867
EES63862.1
ABC transporter, ATP-binding protein.
 
    0.815
EES63868.1
4Fe-4S binding domain protein.
 
    0.794
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
    0.596
EES64425.1
PP-loop family protein; Belongs to the TtcA family.
 
    0.501
EGR54199.1
Hypothetical protein.
       0.434
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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