Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGR54250.1Hypothetical protein. (3165 aa)    
Predicted Functional Partners:
EES63968.1
Filamentous hemeagglutinin family domain protein.
 
 
 0.814
EES63326.1
Outer membrane efflux protein.
 
     0.774
EES63902.1
Hypothetical protein.
  
     0.771
EES64016.1
PRD domain protein.
  
    0.770
EES64015.2
Hypothetical protein.
  
  
 0.769
EES64237.2
SH3 domain protein.
 
   
 0.759
EES63267.1
Hypothetical protein.
 
     0.758
EES63722.1
TonB-dependent receptor plug domain protein.
  
     0.746
EES64277.1
AP endonuclease, family 2.
  
     0.729
EES64564.1
Outer membrane autotransporter barrel domain protein.
 
  
 0.716
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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