Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EGR54205.1Hypothetical protein. (40 aa)    
Predicted Functional Partners:
EES63564.1
Hypothetical protein.
       0.773
EES63567.1
Hypothetical protein.
       0.773
EES63568.1
Hypothetical protein.
       0.773
EGR54201.1
Hypothetical protein.
       0.773
EGR54202.1
Hypothetical protein.
       0.773
EGR54203.1
Phage lysozyme.
       0.773
EGR54204.1
Hypothetical protein.
       0.773
EES63570.1
SpoVG.
       0.762
EES63571.1
Erf family protein.
       0.762
EES63572.1
Hypothetical protein.
       0.751
Your Current Organism:
Fusobacterium varium
NCBI taxonomy Id: 469618
Other names: F. varium ATCC 27725, Fusobacterium varium ATCC 27725
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