STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV02686.1Hypothetical protein; COG: NOG06022 non supervised orthologous group; Psort location: OuterMembrane, score: 9.52. (1066 aa)    
Predicted Functional Partners:
EDV02687.1
KEGG: bfr:BF2640 2.3e-61 putative glycerophosphodiester phosphodiesterase K01126; COG: COG0584 Glycerophosphoryl diester phosphodiesterase.
 
     0.746
EDV02685.1
Hypothetical protein.
       0.549
EDV01063.1
TonB-dependent receptor; KEGG: shn:Shewana3_2312 6.0e-11 1-(5-phosphoribosyl)-5- K01814; COG: COG1629 Outer membrane receptor proteins, mostly Fe transport; Psort location: OuterMembrane, score: 9.52.
  
     0.488
EDV00450.1
SusD family protein; COG: NOG31573 non supervised orthologous group; Psort location: OuterMembrane, score: 9.49.
  
     0.468
EDV02688.1
Hypothetical protein.
       0.465
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.464
EDV02428.1
TonB-dependent receptor; COG: NOG25147 non supervised orthologous group.
   
   0.464
EDV02112.1
Hypothetical protein.
   
   0.464
EDV00291.1
TonB-dependent receptor; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
   
   0.464
EDV00159.1
TonB family domain protein.
   
   0.464
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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