STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV01240.1Hypothetical protein; KEGG: azo:azo2239 4.6e-08 gumF; putative acetyltransferase K00680; COG: COG3594 Fucose 4-O-acetylase and related acetyltransferases; Psort location: CytoplasmicMembrane, score: 9.46. (147 aa)    
Predicted Functional Partners:
EDV01239.1
Nucleotide sugar dehydrogenase; KEGG: dps:DP0047 6.6e-135 wbpO; probable lipopolysaccharide biosynthesis protein (WbpO) K02474; COG: COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Psort location: Cytoplasmic, score: 8.96.
       0.777
EDV01237.1
KEGG: dde:Dde_0358 8.4e-96 NAD-dependent epimerase/dehydratase family protein K01784; COG: COG0451 Nucleoside-diphosphate-sugar epimerases.
       0.704
EDU98682.1
KEGG: tcx:Tcr_1675 6.6e-64 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.697
EDV01242.1
Polysaccharide biosynthesis protein; COG: NOG25117 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.578
EDV01243.1
Hypothetical protein; KEGG: ava:Ava_3572 6.5e-05 glycosyl transferase, group 1 K08256; COG: NOG17015 non supervised orthologous group.
  
  
 0.560
EDV01244.1
Glycosyltransferase, group 1 family protein; KEGG: mma:MM1142 2.7e-15 glycosyltransferase K00754; COG: COG0438 Glycosyltransferase.
  
  
 0.560
EDV01241.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
       0.539
EDV01251.1
KEGG: gka:GK3304 3.1e-121 mannose-6-phosphate isomerase (phosphomannose isomerase); mannose-1-phosphate guanylyl transferase (GDP-mannose pyrophosphorylase) K00971:K01809; COG: COG0662 Mannose-6-phosphate isomerase.
 
  
 0.531
EDV01238.1
Hypothetical protein.
       0.523
EDV01245.1
Glycosyltransferase, group 2 family protein; KEGG: sat:SYN_00821 3.0e-14 glycosyltransferase K00754; COG: COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
    0.521
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.