STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV01320.1Toxin-antitoxin system, toxin component, MazF family; Toxic component of a type II toxin-antitoxin (TA) system. (106 aa)    
Predicted Functional Partners:
EDV01321.1
SpoVT/AbrB-like protein.
 
 
 0.997
EDV01319.1
Hypothetical protein.
       0.776
EDV01322.1
Hypothetical protein.
       0.623
hup
DNA-binding protein HU; COG: COG0776 Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family.
       0.528
EDV01317.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.518
EDV01323.1
Hypothetical protein.
       0.512
EDV01207.1
Transcriptional regulator, HxlR family; COG: COG1733 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.96.
   
    0.459
EDV01119.1
Transcriptional regulator, HxlR family; COG: COG1733 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.96.
   
    0.459
EDV00810.1
Transcriptional regulator, HxlR family; COG: COG1733 Predicted transcriptional regulators; Psort location: Cytoplasmic, score: 8.96.
   
    0.459
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.