STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV00848.1ATPase family associated with various cellular activities (AAA); KEGG: pgi:PG1579 3.9e-130 ATPase, MoxR family K03924; COG: COG0714 MoxR-like ATPases; Psort location: Cytoplasmic, score: 9.97. (331 aa)    
Predicted Functional Partners:
EDV00851.1
COG: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.940
EDV00849.1
Hypothetical protein; COG: COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain); Psort location: Cytoplasmic, score: 8.96.
 
  
 0.939
EDV00852.1
Von Willebrand factor type A domain protein; KEGG: eci:UTI89_C2553 9.9e-06 yfbK; hypothetical protein YfbK; COG: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; Psort location: CytoplasmicMembrane, score: 9.46.
 
 
 0.938
EDV00854.1
Hypothetical protein; COG: NOG06393 non supervised orthologous group.
 
   
 0.814
EDV00853.1
Tetratricopeptide repeat protein; KEGG: rno:309804 2.7e-14 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208; COG: NOG14439 non supervised orthologous group.
 
   
 0.804
EDV00850.1
Hypothetical protein; COG: NOG14440 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.50.
 
    0.764
EDV00855.1
Tetratricopeptide repeat protein; COG: NOG22299 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.50.
 
     0.697
hup-2
DNA-binding protein HU; COG: COG0776 Bacterial nucleoid DNA-binding protein; Belongs to the bacterial histone-like protein family.
 
     0.684
hup-3
DNA-binding protein HU; COG: NOG36317 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96; Belongs to the bacterial histone-like protein family.
       0.643
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
       0.619
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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