STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV00856.1PAP2 family protein; KEGG: ehi:60.t00008 5.9e-07 sphingosine-1-phosphate phosphatase, putative K04716; COG: NOG19101 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00. (236 aa)    
Predicted Functional Partners:
mraY
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.896
uppP
Putative undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
 
 0.892
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.884
EDV00855.1
Tetratricopeptide repeat protein; COG: NOG22299 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.50.
       0.789
EDU99569.1
Hypothetical protein; COG: NOG14434 non supervised orthologous group.
  
 
   0.769
EDV00854.1
Hypothetical protein; COG: NOG06393 non supervised orthologous group.
       0.742
EDU99195.1
Hypothetical protein; COG: NOG11641 non supervised orthologous group.
    
 
 0.727
EDV00853.1
Tetratricopeptide repeat protein; KEGG: rno:309804 2.7e-14 Cdc2l6_predicted; cell division cycle 2-like 6 (CDK8-like) (predicted) K02208; COG: NOG14439 non supervised orthologous group.
  
   0.720
EDU99191.1
V-type ATPase 116kDa subunit family protein; KEGG: bfs:BF2744 5.4e-204 putative V(vacuolar)-type Na+ ATP synthase subunit I K02123; COG: COG1269 Archaeal/vacuolar-type H+-ATPase subunit I; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the V-ATPase 116 kDa subunit family.
    
 
 0.694
EDV00852.1
Von Willebrand factor type A domain protein; KEGG: eci:UTI89_C2553 9.9e-06 yfbK; hypothetical protein YfbK; COG: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; Psort location: CytoplasmicMembrane, score: 9.46.
       0.688
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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