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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV00886.1Putative zinc ribbon domain protein; KEGG: cal:orf19.2410 8.8e-09 IMH1; involved in vesicular transport K01553; COG: COG1579 Zn-ribbon protein, possibly nucleic acid-binding; Psort location: Cytoplasmic, score: 8.96. (263 aa)    
Predicted Functional Partners:
EDV00887.1
Dinuclear metal center protein, YbgI family; COG: COG0327 Uncharacterized conserved protein; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
 
  
 0.942
EDV00888.1
Hypothetical protein.
       0.741
yaeT
COG: COG4775 Outer membrane protein/protective antigen OMA87; Psort location: OuterMembrane, score: 10.00.
  
     0.711
EDV00790.1
Permease, YjgP/YjgQ family; COG: COG0795 Predicted permeases; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.699
EDV02600.1
Hypothetical protein; COG: NOG08813 non supervised orthologous group; Psort location: OuterMembrane, score: 9.52.
  
     0.693
EDV00568.1
Hypothetical protein; COG: NOG29769 non supervised orthologous group.
    
   0.693
EDU99522.1
META domain protein; COG: COG3187 Heat shock protein.
    
   0.693
rpoN
RNA polymerase sigma-54 factor; KEGG: reh:H16_A0387 5.3e-55 rpoN; DNA-directed RNA polymerase sigma subunit (RpoN) K00960; COG: COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog; Psort location: Cytoplasmic, score: 8.96.
  
 
 
 0.663
EDU99569.1
Hypothetical protein; COG: NOG14434 non supervised orthologous group.
 
     0.661
EDV00210.1
Outer membrane protein; COG: NOG19135 non supervised orthologous group.
  
    0.649
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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