STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDV00476.1Transcriptional regulator, TetR family; KEGG: bha:BH3415 0.00047 NADH dehydrogenase K03885; COG: COG1309 Transcriptional regulator; Psort location: Cytoplasmic, score: 8.96. (197 aa)    
Predicted Functional Partners:
fabG
3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.792
EDV00478.1
Pseudouridine synthase, RluA family; KEGG: chu:CHU_3766 1.0e-33 rluC; ribosomal pseudouridine synthase C, large subunit K01718; COG: COG0564 Pseudouridylate synthases, 23S RNA-specific.
  
    0.672
EDU99075.1
Hypothetical protein; COG: NOG23407 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
  
     0.658
EDV02153.1
Hypothetical protein; COG: NOG26638 non supervised orthologous group.
  
     0.617
EDU98973.1
Hypothetical protein; COG: NOG19149 non supervised orthologous group.
  
     0.551
EDU99464.1
Hypothetical protein; COG: NOG19130 non supervised orthologous group.
  
     0.542
EDV00399.1
Sporulation and cell division repeat protein; KEGG: bha:BH1294 0.0077 cwlC; N-acetylmuramoyl-L-alanine amidase (sporulation mother cell wall hydrolase) K01448; COG: NOG14432 non supervised orthologous group.
  
     0.533
EDU98668.1
Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.3e-08 serine/threonine protein kinase with TPR repeats K00908; COG: COG0457 FOG: TPR repeat; Psort location: Cytoplasmic, score: 8.96.
  
     0.532
EDV00866.1
Tetratricopeptide repeat protein; COG: COG0457 FOG: TPR repeat.
  
     0.484
EDV00214.1
Hypothetical protein; COG: NOG27066 non supervised orthologous group.
  
   
 0.476
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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