STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDU99618.1Hypothetical protein; COG: NOG26558 non supervised orthologous group. (329 aa)    
Predicted Functional Partners:
EDV00863.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: eci:UTI89_C0501 1.1e-72 htpG; chaperone HSP90, heat shock protein C 62.5 K04079; COG: COG0326 Molecular chaperone, HSP90 family; Psort location: Cytoplasmic, score: 9.26.
   
 0.790
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.788
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.776
EDV00074.1
Hypothetical protein.
  
     0.769
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.766
EDU98766.1
Threonine/alanine tRNA ligase second additional domain protein; KEGG: sru:SRU_1141 6.7e-16 alanyl-tRNA synthetase K01872; COG: COG0013 Alanyl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.97.
   
 0.766
EDV01911.1
Hypothetical protein; COG: NOG37325 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.765
EDV02456.1
Hypothetical protein; COG: NOG19118 non supervised orthologous group; Psort location: OuterMembrane, score: 9.52.
  
     0.756
EDV00018.1
Hypothetical protein; KEGG: cal:orf19.1346 6.8e-09 HYR6; hyphally regulated cell wall protein K01186; COG: NOG15492 non supervised orthologous group; Psort location: OuterMembrane, score: 9.52.
  
     0.750
EDU99617.1
Hypothetical protein; COG: NOG19152 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
       0.732
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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