STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDU99680.1Hypothetical protein; COG: NOG14473 non supervised orthologous group. (135 aa)    
Predicted Functional Partners:
EDU99682.1
YbbR-like protein; COG: NOG14472 non supervised orthologous group.
 
     0.780
nusB
Transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
 
     0.778
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.756
EDU98646.1
Hypothetical protein; COG: NOG14471 non supervised orthologous group.
  
     0.751
yajC
COG: COG1862 Preprotein translocase subunit YajC.
       0.738
EDU99268.1
Hypothetical protein; COG: NOG11645 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
  
     0.726
hemD
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.725
EDV00502.1
Hypothetical protein; KEGG: fnu:FN0522 4.5e-08 exonuclease SBCC K03546; COG: NOG07592 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
  
     0.722
EDV00050.1
Hypothetical protein; COG: NOG27351 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96.
  
     0.722
EDV00884.1
Hypothetical protein; COG: NOG14438 non supervised orthologous group.
  
     0.716
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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