STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pelA-3Pectate lyase; KEGG: rba:RB3417 6.2e-41 pectate lyase K01728; COG: COG1073 Hydrolases of the alpha/beta superfamily. (732 aa)    
Predicted Functional Partners:
EDU99814.1
GDSL-like protein; KEGG: sus:Acid_1249 3.3e-62 pectinesterase K01051; COG: COG2755 Lysophospholipase L1 and related esterases; Psort location: Extracellular, score: 9.72.
  
 0.922
EDV02362.1
KEGG: bld:BLi04100 7.8e-29 hypothetical protein; COG: COG2755 Lysophospholipase L1 and related esterases.
 
  
 0.721
EDV00840.1
Competence/damage-inducible domain protein CinA; COG: COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA; Belongs to the CinA family.
  
 
  0.646
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
  0.598
EDU99816.1
KEGG: rba:RB3417 3.5e-13 pectate lyase K01728; COG: NOG10874 non supervised orthologous group.
 
    
0.597
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.589
EDU99174.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 1.4e-79 exo-poly-alpha-D-galacturonosidase, putative K01238; COG: COG5434 Endopolygalacturonase; Psort location: Extracellular, score: 9.45; Belongs to the glycosyl hydrolase 28 family.
  
     0.553
EDU99791.1
Polygalacturonase (pectinase); KEGG: tma:TM0437 1.2e-89 exo-poly-alpha-D-galacturonosidase, putative K01238; COG: COG5434 Endopolygalacturonase; Psort location: Extracellular, score: 9.71; Belongs to the glycosyl hydrolase 28 family.
  
     0.543
EDV00231.1
Phosphoribulokinase/uridine kinase family protein; KEGG: bth:BT2527 7.7e-228 uridine kinase (uridine monophosphokinase) K00876; COG: COG0572 Uridine kinase.
    
  0.533
EDU99838.1
Pectinesterase; KEGG: sus:Acid_1249 7.8e-19 pectinesterase K01051; COG: COG4677 Pectin methylesterase.
 
     0.471
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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