STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDU99817.1Cupin domain protein; KEGG: nph:NP4718A 0.00049 homolog 1 to mannose-1-phosphate guanylyltransferase (GDP) K00971; COG: COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain. (107 aa)    
Predicted Functional Partners:
EDU99818.1
Hypothetical protein.
       0.572
EDV00443.1
Glycosyl hydrolase, family 88; COG: COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
  
     0.531
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.479
EDV01251.1
KEGG: gka:GK3304 3.1e-121 mannose-6-phosphate isomerase (phosphomannose isomerase); mannose-1-phosphate guanylyl transferase (GDP-mannose pyrophosphorylase) K00971:K01809; COG: COG0662 Mannose-6-phosphate isomerase.
  
  0.461
EDV00806.1
Sigma-70 region 2; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
    
 
 0.454
EDU99816.1
KEGG: rba:RB3417 3.5e-13 pectate lyase K01728; COG: NOG10874 non supervised orthologous group.
       0.454
EDU99548.1
Cupin domain protein; KEGG: azo:azo0951 7.0e-05 conserved hypothetical phosphomannose protein K01809; COG: NOG20110 non supervised orthologous group.
  
  0.444
EDV02251.1
UbiC transcription regulator-associated domain protein; KEGG: mtc:MT0817 9.9e-09 dihydrolipoamide dehydrogenase K00382; COG: COG2188 Transcriptional regulators; Psort location: Cytoplasmic, score: 8.96.
  
    0.421
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.418
purB
KEGG: bth:BT3871 4.8e-212 adenylosuccinate lyase K01756; COG: COG0015 Adenylosuccinate lyase; Psort location: Cytoplasmic, score: 8.96.
   
 0.409
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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