STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDU99831.1Hypothetical protein; KEGG: ecj:JW3601 1.5e-09 rfaJ; UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase K03276; COG: COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases. (157 aa)    
Predicted Functional Partners:
EDU98757.1
Hypothetical protein; COG: NOG36335 non supervised orthologous group; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.573
EDU99830.1
Hypothetical protein.
       0.552
EDU99686.1
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: bfr:BF1661 1.1e-102 putative short-chain dehydrogenase; COG: COG4221 Short-chain alcohol dehydrogenase of unknown specificity; Psort location: Cytoplasmic, score: 9.97; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.523
EDU98682.1
KEGG: tcx:Tcr_1675 6.6e-64 undecaprenyl-phosphate galactosephosphotransferase K03606; COG: COG2148 Sugar transferases involved in lipopolysaccharide synthesis; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.505
EDV02649.1
Hypothetical protein; KEGG: crp:CRP_111 0.0040 valyl-tRNA synthetase K01873; COG: COG0438 Glycosyltransferase.
  
 
 0.470
metF
KEGG: bfr:BF4092 1.7e-143 5,10-methylenetetrahydrofolate reductase K00297; COG: COG0685 5,10-methylenetetrahydrofolate reductase; Psort location: Cytoplasmic, score: 8.96.
  
    0.460
waaA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.457
hisB
Histidinol-phosphatase; KEGG: bth:BT0203 1.4e-173 hisB; histidinol-phosphatase / imidazoleglycerol-phosphate dehydratase K01089:K01693; COG: COG0131 Imidazoleglycerol-phosphate dehydratase; In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family.
    
 0.445
EDV01919.1
Nucleotidyl transferase; KEGG: bth:BT1633 9.2e-90 mannose-1-phosphate guanyltransferase K00966; COG: COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); Psort location: Cytoplasmic, score: 8.96.
  
 
 0.417
EDU99361.1
Glycosyltransferase, group 1 family protein; KEGG: sgl:SG2200 6.0e-20 putative lipopolysaccharide glycosyltransferase; COG: COG0438 Glycosyltransferase.
  
 
 0.411
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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