STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDU98821.1Ser/Thr phosphatase family protein; COG: NOG12131 non supervised orthologous group; Psort location: Cytoplasmic, score: 8.96. (470 aa)    
Predicted Functional Partners:
EDU98823.1
Tat pathway signal sequence domain protein.
 
    0.767
EDV02873.1
Ankyrin repeat protein; KEGG: gga:431670 0.00015 RCJMB04_1b10, LOC431670; similar to Death-associated protein kinase 1 (DAP kinase 1) K08803; COG: COG0666 FOG: Ankyrin repeat; Psort location: CytoplasmicMembrane, score: 9.16.
    
 0.715
EDV02636.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
    
 0.715
EDV01945.1
Ankyrin repeat protein; KEGG: cne:CNA04190 3.4e-08 palmitoyltransferase K00680; COG: COG0666 FOG: Ankyrin repeat.
    
 0.715
EDV01952.1
Ankyrin repeat protein; KEGG: dre:393543 1.1e-07 ilk; integrin linked kinase K06272; COG: COG5261 Protein involved in regulation of cellular morphogenesis/cytokinesis.
    
 0.715
EDV00481.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: hch:HCH_00309 6.2e-47 signal transduction histidine kinase K07679; COG: COG0642 Signal transduction histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.669
EDU98820.1
KEGG: sto:ST2222 0.0059 hypothetical NADH-plastoquinone oxidoreductase subunit 5 K00341:K00342; COG: COG4299 Uncharacterized conserved protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.652
EDU99822.1
SusD family protein; COG: NOG31573 non supervised orthologous group.
  
     0.650
EDV00811.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: ana:all4963 9.6e-46 cyaC; adenylate cyclase carring two-component hybrid sensor and regulator domains; COG: COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.608
EDV00355.1
SusD family protein; COG: NOG31573 non supervised orthologous group; Psort location: OuterMembrane, score: 9.52.
  
     0.605
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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