STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDU98667.1D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain protein; KEGG: pfu:PF0370 8.6e-23 2-hydroxyacid dehydrogenase K00058; COG: COG1052 Lactate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (305 aa)    
Predicted Functional Partners:
pdxB-3
KEGG: bfs:BF1944 7.1e-99 glycerate dehydrogenase K00018; COG: COG1052 Lactate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 
0.907
EDV02848.1
KDPG and KHG aldolase; KEGG: bth:BT0489 2.5e-110 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase K01625:K01650; COG: COG0800 2-keto-3-deoxy-6-phosphogluconate aldolase; Psort location: Cytoplasmic, score: 9.26.
    
  0.878
EDV01438.1
HAD hydrolase, family IA, variant 1; KEGG: bfr:BF0877 1.4e-72 phosphoglycolate phosphatase K01091; COG: COG0546 Predicted phosphatases; Psort location: Cytoplasmic, score: 8.96.
    
  0.874
nifJ
KEGG: bth:BT1747 0. pyruvate-flavodoxin oxidoreductase K03737; COG: COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit; Psort location: Cytoplasmic, score: 8.96.
    
  0.819
EDV00539.1
Phosphate acetyl/butyryl transferase; KEGG: bfs:BF3408 0. maeB; putative NADP-dependent malic enzyme K00029; COG: COG0280 Phosphotransacetylase; Psort location: Cytoplasmic, score: 8.96.
   
 0.791
pdxB-2
KEGG: bth:BT1152 4.5e-136 D-3-phosphoglycerate dehydrogenase K00058; COG: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Psort location: Cytoplasmic, score: 9.26; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.743
EDU98818.1
Hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.714
pdxB
4-phosphoerythronate dehydrogenase; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate.
 
  
 0.701
EDU98668.1
Tetratricopeptide repeat protein; KEGG: ava:Ava_1552 5.3e-08 serine/threonine protein kinase with TPR repeats K00908; COG: COG0457 FOG: TPR repeat; Psort location: Cytoplasmic, score: 8.96.
       0.671
EDV01433.1
Biotin-requiring enzyme; KEGG: bfr:BF2937 1.1e-285 pyruvate carboxylase subunit B K01960; COG: COG5016 Pyruvate/oxaloacetate carboxyltransferase.
    
 0.653
Your Current Organism:
Bacteroides coprocola
NCBI taxonomy Id: 470145
Other names: B. coprocola DSM 17136, Bacteroides coprocola DSM 17136, Bacteroides coprocola M16, Bacteroides coprocola str. DSM 17136, Bacteroides coprocola strain DSM 17136
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