Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OOS22952.1 | OOS22954.1 | B0680_09065 | B0680_09075 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.664 |
OOS22952.1 | priA | B0680_09065 | B0680_09070 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.773 |
OOS22954.1 | OOS22952.1 | B0680_09075 | B0680_09065 | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.664 |
OOS22954.1 | OOS25101.1 | B0680_09075 | B0680_03085 | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.443 |
OOS22954.1 | OOS26009.1 | B0680_09075 | B0680_00770 | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.460 |
OOS22954.1 | priA | B0680_09075 | B0680_09070 | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | 0.664 |
OOS22954.1 | rlmD | B0680_09075 | B0680_10065 | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 23S rRNA (uracil(1939)-C(5))-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.442 |
OOS25101.1 | OOS22954.1 | B0680_03085 | B0680_09075 | Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.443 |
OOS26009.1 | OOS22954.1 | B0680_00770 | B0680_09075 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.460 |
priA | OOS22952.1 | B0680_09070 | B0680_09065 | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.773 |
priA | OOS22954.1 | B0680_09070 | B0680_09075 | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.664 |
rlmD | OOS22954.1 | B0680_10065 | B0680_09075 | 23S rRNA (uracil(1939)-C(5))-methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.442 |