STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG39207.1Type IX secretion system membrane protein, PorP/SprF family. (309 aa)    
Predicted Functional Partners:
SDG39229.1
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins.
 
     0.929
SDG39182.1
Gliding motility-associated C-terminal domain-containing protein.
 
     0.896
SDH05664.1
Outer membrane protein OmpA.
 
     0.755
SDG79633.1
Protein involved in gliding motility SprE.
  
   
 0.696
SDG63137.1
Protein of unknown function.
  
     0.689
SDG78452.1
Hypothetical protein.
  
     0.673
SDG40837.1
Gliding motility-associated C-terminal domain-containing protein.
  
     0.654
SDG57927.1
Probable protein-translocating porin PorT.
 
   
 0.621
SDG48842.1
Protein involved in gliding motility SprA.
  
   
 0.612
SDG90687.1
Protein involved in gliding motility GldJ.
 
     0.612
Your Current Organism:
Psychroflexus sediminis
NCBI taxonomy Id: 470826
Other names: CCTCC AA 207030, DSM 19803, KCTC 22166, P. sediminis, Psychroflexus sediminis Chen et al. 2009, Psychroflexus sp. YIM C238, YIM C238
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