STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG45410.1LPS export ABC transporter protein LptC. (185 aa)    
Predicted Functional Partners:
SDG45387.1
Tetratricopeptide repeat-containing protein.
 
     0.900
SDG45429.1
Hypothetical protein.
 
     0.862
ftsA
Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family.
   
 
 0.854
SDG45369.1
Long-chain fatty acid transport protein.
 
    0.853
coaX
Type III pantothenate kinase; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
 
     0.824
SDG68611.1
Cell division protein FtsQ.
 
 
 
 0.790
SDG45443.1
Hemolysin, contains CBS domains.
       0.784
SDG99772.1
Complex I intermediate-associated protein 30 (CIA30).
    
 
 0.769
SDG98440.1
Family of unknown function.
  
     0.710
SDG45471.1
Peptidyl-prolyl cis-trans isomerase D.
 
     0.703
Your Current Organism:
Psychroflexus sediminis
NCBI taxonomy Id: 470826
Other names: CCTCC AA 207030, DSM 19803, KCTC 22166, P. sediminis, Psychroflexus sediminis Chen et al. 2009, Psychroflexus sp. YIM C238, YIM C238
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