STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG57450.1Beta-carotene 15,15'-monooxygenase, Brp/Blh family; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family. (298 aa)    
Predicted Functional Partners:
SDG57432.1
Bacteriorhodopsin.
 
     0.903
SDG53493.1
DoxX-like family protein.
  
     0.771
SDG85824.1
Hypothetical protein.
  
     0.765
SDG64320.1
Hypothetical protein.
  
     0.760
SDG57068.1
DoxX-like family protein.
  
     0.752
SDG69283.1
Hypothetical protein.
  
     0.702
SDG64806.1
Hypothetical protein.
  
     0.636
SDG56460.1
Bacteriorhodopsin-like protein.
 
     0.620
SDG63774.1
Hypothetical protein.
  
     0.611
SDG67418.1
Protein of unknown function.
  
     0.607
Your Current Organism:
Psychroflexus sediminis
NCBI taxonomy Id: 470826
Other names: CCTCC AA 207030, DSM 19803, KCTC 22166, P. sediminis, Psychroflexus sediminis Chen et al. 2009, Psychroflexus sp. YIM C238, YIM C238
Server load: low (24%) [HD]