STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG62579.1Phytoene desaturase. (485 aa)    
Predicted Functional Partners:
SDG62602.1
Phytoene/squalene synthetase.
 
 0.999
SDG62659.1
Lycopene beta-cyclase.
 
 
 0.986
SDG62615.1
Beta-carotene 3-hydroxylase.
 
   
 0.964
SDG62641.1
Putative membrane protein.
 
  
 0.900
SDG62557.1
B12 binding domain-containing protein.
 
  
 0.895
SDG62626.1
Phytoene desaturase.
 
  
 
0.886
SDG92843.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.575
SDG62533.1
Hypothetical protein.
       0.440
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.440
gpmI
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.435
Your Current Organism:
Psychroflexus sediminis
NCBI taxonomy Id: 470826
Other names: CCTCC AA 207030, DSM 19803, KCTC 22166, P. sediminis, Psychroflexus sediminis Chen et al. 2009, Psychroflexus sp. YIM C238, YIM C238
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