STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG77771.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (289 aa)    
Predicted Functional Partners:
SDG77756.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
  
 
0.802
SDG77788.1
Uncharacterized protein.
       0.757
SDG77720.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.721
SDG77810.1
Predicted arabinose efflux permease, MFS family.
       0.703
lpxC
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
    
  0.681
SDG77738.1
Uncharacterized membrane protein.
       0.678
SDG77688.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 
0.623
SDG77705.1
Uncharacterized zinc-type alcohol dehydrogenase-like protein.
  
  
 0.610
SDG77823.1
Conserved hypothetical protein.
       0.493
SDG77885.1
Proline iminopeptidase.
    
  0.432
Your Current Organism:
Psychroflexus sediminis
NCBI taxonomy Id: 470826
Other names: CCTCC AA 207030, DSM 19803, KCTC 22166, P. sediminis, Psychroflexus sediminis Chen et al. 2009, Psychroflexus sp. YIM C238, YIM C238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.