STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG87513.1AsmA-like C-terminal region. (860 aa)    
Predicted Functional Partners:
SDG70345.1
Hypothetical protein.
  
     0.620
SDG87499.1
Hypothetical protein.
       0.620
SDG87532.1
Hypothetical protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.605
SDG97121.1
Hypothetical protein.
  
     0.544
SDG45387.1
Tetratricopeptide repeat-containing protein.
  
     0.543
SDG83576.1
CarboxypepD_reg-like domain-containing protein.
  
     0.522
SDG42759.1
Hypothetical protein.
  
     0.505
SDG79285.1
Protein TonB.
  
     0.475
SDG92360.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.473
SDG98440.1
Family of unknown function.
  
   
 0.471
Your Current Organism:
Psychroflexus sediminis
NCBI taxonomy Id: 470826
Other names: CCTCC AA 207030, DSM 19803, KCTC 22166, P. sediminis, Psychroflexus sediminis Chen et al. 2009, Psychroflexus sp. YIM C238, YIM C238
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.