Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDG70345.1 | SDG89843.1 | SAMN04488027_105170 | SAMN04488027_11056 | Hypothetical protein. | Biopolymer transport protein ExbD. | 0.767 |
SDG70345.1 | SDG95935.1 | SAMN04488027_105170 | SAMN04488027_11267 | Hypothetical protein. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.702 |
SDG75921.1 | SDG78986.1 | SAMN04488027_106156 | SAMN04488027_10778 | Peptidase family M23. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.433 |
SDG75921.1 | SDG95935.1 | SAMN04488027_106156 | SAMN04488027_11267 | Peptidase family M23. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.670 |
SDG78986.1 | SDG75921.1 | SAMN04488027_10778 | SAMN04488027_106156 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | Peptidase family M23. | 0.433 |
SDG78986.1 | SDG95935.1 | SAMN04488027_10778 | SAMN04488027_11267 | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.636 |
SDG89843.1 | SDG70345.1 | SAMN04488027_11056 | SAMN04488027_105170 | Biopolymer transport protein ExbD. | Hypothetical protein. | 0.767 |
SDG89843.1 | SDG95935.1 | SAMN04488027_11056 | SAMN04488027_11267 | Biopolymer transport protein ExbD. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.557 |
SDG95935.1 | SDG70345.1 | SAMN04488027_11267 | SAMN04488027_105170 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | Hypothetical protein. | 0.702 |
SDG95935.1 | SDG75921.1 | SAMN04488027_11267 | SAMN04488027_106156 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | Peptidase family M23. | 0.670 |
SDG95935.1 | SDG78986.1 | SAMN04488027_11267 | SAMN04488027_10778 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB. | 0.636 |
SDG95935.1 | SDG89843.1 | SAMN04488027_11267 | SAMN04488027_11056 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | Biopolymer transport protein ExbD. | 0.557 |
SDG95935.1 | SDG95954.1 | SAMN04488027_11267 | SAMN04488027_11268 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | GH3 auxin-responsive promoter. | 0.773 |
SDG95935.1 | SDG95971.1 | SAMN04488027_11267 | SAMN04488027_11269 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | Hypothetical protein. | 0.702 |
SDG95935.1 | SDG95986.1 | SAMN04488027_11267 | SAMN04488027_11270 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. | 0.701 |
SDG95935.1 | SDG96009.1 | SAMN04488027_11267 | SAMN04488027_11271 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family. | 0.691 |
SDG95935.1 | SDG96023.1 | SAMN04488027_11267 | SAMN04488027_11272 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. | 0.701 |
SDG95935.1 | SDG96037.1 | SAMN04488027_11267 | SAMN04488027_11273 | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.701 |
SDG95954.1 | SDG95935.1 | SAMN04488027_11268 | SAMN04488027_11267 | GH3 auxin-responsive promoter. | Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain. | 0.773 |
SDG95954.1 | SDG95971.1 | SAMN04488027_11268 | SAMN04488027_11269 | GH3 auxin-responsive promoter. | Hypothetical protein. | 0.769 |
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