STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKB04900.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
KKB04901.1
Protein of avirulence locus ImpE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.799
tssE
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.799
KKB04899.1
PppA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.771
tagH
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.765
tssF
Type VI secretion system protein ImpG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.744
tssG
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.744
tssH
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family.
       0.569
KKB04906.1
Nuclease PIN; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.538
tssI
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
KKB04908.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.480
Your Current Organism:
Pantoea anthophila
NCBI taxonomy Id: 470931
Other names: LMG 2558, LMG:2558, P. anthophila, Pantoea anthophila Brady et al. 2009, Pantoea sp. LMG 2558, Pantoea sp. LMG 2560, strain BD 871
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