STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKB04906.1Nuclease PIN; Derived by automated computational analysis using gene prediction method: Protein Homology. (500 aa)    
Predicted Functional Partners:
KKB04899.1
PppA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.952
tagH-2
Type VI secretion system, core protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.934
KKB04956.1
PppA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.915
arcB
Aerobic respiration control sensor protein ArcB; Sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.851
tssH
Molecular chaperone; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family.
 
 
 0.832
tagH
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.829
KKB04909.1
Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.793
KKB04526.1
BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.791
KKB02730.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.791
tssI
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.783
Your Current Organism:
Pantoea anthophila
NCBI taxonomy Id: 470931
Other names: LMG 2558, LMG:2558, P. anthophila, Pantoea anthophila Brady et al. 2009, Pantoea sp. LMG 2558, Pantoea sp. LMG 2560, strain BD 871
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.