STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV91194.1Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)    
Predicted Functional Partners:
ALV94288.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.981
ALV91195.1
Aminomethyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.952
ALV91920.1
Cystine transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
   0.917
ALV91193.1
Polar amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.915
glnH
Glutamine ABC transporter substrate-bindnig protein; Similar to periplasmic-binding component of ABC transporters; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
   0.906
ALV91191.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.899
ALV91192.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.893
ALV92862.1
Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
   0.890
ALV92865.1
Arginine ABC transporter substrate-binding protein; With ArtPMQI is involved in arginine transport; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family.
   0.879
ALV92937.1
Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.858
Your Current Organism:
Pantoea vagans
NCBI taxonomy Id: 470934
Other names: BCC 105, LMG 24199, LMG:24199, P. vagans, Pantoea sp. BCC002, Pantoea sp. BCC004, Pantoea sp. BCC006, Pantoea sp. BCC067, Pantoea sp. BCC072, Pantoea sp. BCC075, Pantoea sp. BCC079, Pantoea sp. BCC081, Pantoea sp. BCC082, Pantoea sp. BCC107, Pantoea sp. BCC208, Pantoea sp. BCC427, Pantoea sp. BD 502, Pantoea sp. BD502, Pantoea sp. LMG 24195, Pantoea sp. LMG 24196, Pantoea sp. LMG 24199, Pantoea sp. LMG 24201, Pantoea vagans Brady et al. 2009, strain BD 765, strain R-21566
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