STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araDCatalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
araB
Ribulokinase; Catalyzes the phosphorylation of ribulose to ribulose 5-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
araA
Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.859
rhaB
Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
  
 0.701
ALV93423.1
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
     0.641
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.605
ALV93007.1
BvgS; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.599
ALV93101.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.599
metH
B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.598
ALV93674.1
Aerobic respiration control sensor protein ArcB; Sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.560
ALV91253.1
Histidine kinase; Part of the two-component regulatory system with UvrY; involved in the regulation of carbon metabolism via the csrA/csrB regulatory system; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.552
Your Current Organism:
Pantoea vagans
NCBI taxonomy Id: 470934
Other names: BCC 105, LMG 24199, LMG:24199, P. vagans, Pantoea sp. BCC002, Pantoea sp. BCC004, Pantoea sp. BCC006, Pantoea sp. BCC067, Pantoea sp. BCC072, Pantoea sp. BCC075, Pantoea sp. BCC079, Pantoea sp. BCC081, Pantoea sp. BCC082, Pantoea sp. BCC107, Pantoea sp. BCC208, Pantoea sp. BCC427, Pantoea sp. BD 502, Pantoea sp. BD502, Pantoea sp. LMG 24195, Pantoea sp. LMG 24196, Pantoea sp. LMG 24199, Pantoea sp. LMG 24201, Pantoea vagans Brady et al. 2009, strain BD 765, strain R-21566
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.