STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALV92302.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)    
Predicted Functional Partners:
ALV92304.1
Acriflavine resistance protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.962
ALV92303.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.960
ALV93153.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.846
ALV93152.1
Multidrug transporter; With AcrD and TolC forms a transport system involved in resistance to a number of compounds including lipophilic antibiotics; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.839
ALV91205.1
Antibiotic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.837
ALV91447.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.834
ALV91206.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.831
ALV92395.1
Acriflavin resistance protein AcrA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.684
ALV91509.1
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.633
oqxB
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.631
Your Current Organism:
Pantoea vagans
NCBI taxonomy Id: 470934
Other names: BCC 105, LMG 24199, LMG:24199, P. vagans, Pantoea sp. BCC002, Pantoea sp. BCC004, Pantoea sp. BCC006, Pantoea sp. BCC067, Pantoea sp. BCC072, Pantoea sp. BCC075, Pantoea sp. BCC079, Pantoea sp. BCC081, Pantoea sp. BCC082, Pantoea sp. BCC107, Pantoea sp. BCC208, Pantoea sp. BCC427, Pantoea sp. BD 502, Pantoea sp. BD502, Pantoea sp. LMG 24195, Pantoea sp. LMG 24196, Pantoea sp. LMG 24199, Pantoea sp. LMG 24201, Pantoea vagans Brady et al. 2009, strain BD 765, strain R-21566
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