STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppDDppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)    
Predicted Functional Partners:
ALV93982.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
ALV93983.1
Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.995
ALV90635.1
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.885
ALV94260.1
Glutathione ABC transporter permease; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.885
dppF
Part of the ABC transporter complex DppABCDF involved in the transport of dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.877
ALV92354.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.873
ALV91334.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.849
ALV90641.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.846
ALV91794.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.841
ALV94002.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.828
Your Current Organism:
Pantoea vagans
NCBI taxonomy Id: 470934
Other names: BCC 105, LMG 24199, LMG:24199, P. vagans, Pantoea sp. BCC002, Pantoea sp. BCC004, Pantoea sp. BCC006, Pantoea sp. BCC067, Pantoea sp. BCC072, Pantoea sp. BCC075, Pantoea sp. BCC079, Pantoea sp. BCC081, Pantoea sp. BCC082, Pantoea sp. BCC107, Pantoea sp. BCC208, Pantoea sp. BCC427, Pantoea sp. BD 502, Pantoea sp. BD502, Pantoea sp. LMG 24195, Pantoea sp. LMG 24196, Pantoea sp. LMG 24199, Pantoea sp. LMG 24201, Pantoea vagans Brady et al. 2009, strain BD 765, strain R-21566
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