STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVFBDipicolinate synthase subunit B; Involved in production of dipicolinic acid (pyridine-2,6-dicarboxylic acid, DPA) which is synthesized late in sporulation in the mother cell and accumulates in the spore; mutations in this gene result in a lack of DPA synthesis; presumably functions with SpoVFA to form the synthase enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)    
Predicted Functional Partners:
KPV39838.1
Dipicolinate synthase subunit A; Catalyzes the synthesis of dipicolinic acid from dihydroxydipicolinic acid; plays a role in spore heat resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
KPV43267.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.768
KPV44884.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.729
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
    
  0.721
KPV41829.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.711
KPV40767.1
Spore gernimation protein GerA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
KPV39886.1
Spore gernimation protein GerA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.708
KPV45384.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
KPV43098.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.707
KPV43857.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.706
Your Current Organism:
Alicyclobacillus ferrooxydans
NCBI taxonomy Id: 471514
Other names: A. ferrooxydans, Alicyclobacillus ferrooxydans Jiang et al. 2008, CGMCC 1.6357, DSM 22381, JCM 15090, strain TC-34
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