Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| TGRD_471 | TGRD_472 | TGRD_471 | TGRD_472 | Lipoate-protein ligase A-like protein. | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | 0.777 |
| TGRD_471 | TGRD_473 | TGRD_471 | TGRD_473 | Lipoate-protein ligase A-like protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.500 |
| TGRD_471 | murJ | TGRD_471 | TGRD_474 | Lipoate-protein ligase A-like protein. | Cytoplasmic membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 0.466 |
| TGRD_472 | TGRD_471 | TGRD_472 | TGRD_471 | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | Lipoate-protein ligase A-like protein. | 0.777 |
| TGRD_472 | TGRD_473 | TGRD_472 | TGRD_473 | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.605 |
| TGRD_472 | murJ | TGRD_472 | TGRD_474 | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | Cytoplasmic membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 0.517 |
| TGRD_472 | polA | TGRD_472 | TGRD_013 | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.476 |
| TGRD_472 | sigA | TGRD_472 | TGRD_244 | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.549 |
| TGRD_473 | TGRD_471 | TGRD_473 | TGRD_471 | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Lipoate-protein ligase A-like protein. | 0.500 |
| TGRD_473 | TGRD_472 | TGRD_473 | TGRD_472 | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | 0.605 |
| TGRD_473 | murJ | TGRD_473 | TGRD_474 | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Cytoplasmic membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 0.740 |
| TGRD_473 | polA | TGRD_473 | TGRD_013 | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.509 |
| TGRD_473 | sigA | TGRD_473 | TGRD_244 | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.404 |
| murJ | TGRD_471 | TGRD_474 | TGRD_471 | Cytoplasmic membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | Lipoate-protein ligase A-like protein. | 0.466 |
| murJ | TGRD_472 | TGRD_474 | TGRD_472 | Cytoplasmic membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | 0.517 |
| murJ | TGRD_473 | TGRD_474 | TGRD_473 | Cytoplasmic membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.740 |
| polA | TGRD_472 | TGRD_013 | TGRD_472 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | 0.476 |
| polA | TGRD_473 | TGRD_013 | TGRD_473 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.509 |
| polA | sigA | TGRD_013 | TGRD_244 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.505 |
| sigA | TGRD_472 | TGRD_244 | TGRD_472 | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 6-O-methylguanine-DNA methyltransferase-like protein; 6-O-methylguanine-DNA methyltransferase DNA-binding domain. | 0.549 |
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