STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcur_1230PFAM: protein of unknown function DUF397. (64 aa)    
Predicted Functional Partners:
Tcur_1231
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: hypothetical protein; K03627 putative transcription factor.
 
     0.914
Tcur_4780
Hypothetical protein.
  
     0.695
Tcur_0442
SMART: helix-turn-helix domain protein.
 
     0.691
Tcur_3502
Hypothetical protein.
  
     0.673
Tcur_1305
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: sme:SMc00351 hypothetical protein.
 
     0.657
Tcur_4158
Hypothetical protein.
 
     0.636
Tcur_0488
Transcriptional regulator, XRE family.
  
     0.621
Tcur_3781
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: dol:Dole_2981 helix-turn-helix domain- containing protein.
  
     0.615
Tcur_2542
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein.
  
     0.614
Tcur_4270
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
 
     0.614
Your Current Organism:
Thermomonospora curvata
NCBI taxonomy Id: 471852
Other names: T. curvata DSM 43183, Thermomonospora curvata DSM 43183, Thermomonospora curvata IFO 15933, Thermomonospora curvata JCM 3096, Thermomonospora curvata NBRC 15933, Thermomonospora curvata str. DSM 43183, Thermomonospora curvata strain DSM 43183
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.