STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcur_1850PFAM: type II secretion system protein; KEGG: dvl:Dvul_1107 type II secretion system protein. (307 aa)    
Predicted Functional Partners:
Tcur_1852
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: sat:SYN_01497 flp pilus assembly protein, ATPase.
 
  
 0.974
Tcur_1853
SMART: AAA ATPase; KEGG: ank:AnaeK_2914 Flp pilus assembly protein ATPase CpaE-like protein.
 
  
 0.974
Tcur_1854
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: ppd:Ppro_2704 SAF domain-containing protein.
 
  
 0.967
Tcur_1851
PFAM: type II secretion system protein; von Willebrand factor type A; SMART: von Willebrand factor type A; KEGG: rpi:Rpic_0587 type II secretion system protein.
 
  
0.956
Tcur_1856
PFAM: TadE family protein; KEGG: gbm:Gbem_1838 TadE family protein.
 
    0.893
Tcur_4838
PFAM: type II secretion system protein E; KEGG: ppw:PputW619_0846 type II secretion system protein E.
 
  
 0.893
Tcur_4142
PFAM: type II secretion system protein E; KEGG: smt:Smal_2323 type II secretion system protein E.
 
  
 0.892
Tcur_1855
KEGG: bte:BTH_II2270 hypothetical protein.
 
    0.887
Tcur_4836
PFAM: type II secretion system protein; KEGG: ank:AnaeK_2911 type II secretion system protein.
 
  
0.762
Tcur_3555
KEGG: dvm:DvMF_2963 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; PAS fold domain protein; PAS fold-4 domain protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein.
  
    0.746
Your Current Organism:
Thermomonospora curvata
NCBI taxonomy Id: 471852
Other names: T. curvata DSM 43183, Thermomonospora curvata DSM 43183, Thermomonospora curvata IFO 15933, Thermomonospora curvata JCM 3096, Thermomonospora curvata NBRC 15933, Thermomonospora curvata str. DSM 43183, Thermomonospora curvata strain DSM 43183
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