STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcur_3116PFAM: cyclase family protein; KEGG: pzu:PHZ_c1594 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Tcur_0658
PFAM: protein of unknown function DUF849; KEGG: rfr:Rfer_3885 hypothetical protein.
  
    0.749
Tcur_3115
Hypothetical protein.
       0.693
Tcur_0278
PFAM: major facilitator superfamily MFS_1; KEGG: bvi:Bcep1808_4007 major facilitator transporter.
   
    0.581
Tcur_3114
TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: oca:OCAR_5001 NADPH-dependent f420 reductase.
       0.478
Tcur_3316
TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: bcm:Bcenmc03_3447 major facilitator transporter.
  
    0.447
Tcur_3900
PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: dat:HRM2_16080 Hbd1.
  
    0.407
Your Current Organism:
Thermomonospora curvata
NCBI taxonomy Id: 471852
Other names: T. curvata DSM 43183, Thermomonospora curvata DSM 43183, Thermomonospora curvata IFO 15933, Thermomonospora curvata JCM 3096, Thermomonospora curvata NBRC 15933, Thermomonospora curvata str. DSM 43183, Thermomonospora curvata strain DSM 43183
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