STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Tcur_3904KEGG: pat:Patl_3261 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Tcur_3905
PFAM: regulatory protein TetR; KEGG: xau:Xaut_2825 TetR family transcriptional regulator.
       0.598
nucS
Protein of unknown function DUF91; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
       0.594
Tcur_3902
PFAM: GCN5-related N-acetyltransferase; KEGG: sml:Smlt1668 putative acetyltransferase.
 
     0.489
Tcur_3906
PFAM: peptidase M50; KEGG: cak:Caul_3959 peptidase M50.
       0.464
Tcur_1998
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: rlt:Rleg2_5436 transcriptional regulator, LuxR family.
  
     0.436
Tcur_1073
Hypothetical protein.
  
     0.415
Tcur_2786
PFAM: monooxygenase FAD-binding; KEGG: bur:Bcep18194_A4891 monooxygenase, FAD- binding.
  
     0.408
Your Current Organism:
Thermomonospora curvata
NCBI taxonomy Id: 471852
Other names: T. curvata DSM 43183, Thermomonospora curvata DSM 43183, Thermomonospora curvata IFO 15933, Thermomonospora curvata JCM 3096, Thermomonospora curvata NBRC 15933, Thermomonospora curvata str. DSM 43183, Thermomonospora curvata strain DSM 43183
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