STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0079PFAM: Phosphotransferase enzyme family. (259 aa)    
Predicted Functional Partners:
Bcav_4199
PFAM: Glycosyl hydrolases family 43.
  
     0.636
Bcav_4198
PFAM: Bacterial extracellular solute-binding protein.
  
     0.607
Bcav_2854
PFAM: NAD dependent epimerase/dehydratase family.
  
     0.583
Bcav_4109
TIGRFAM: LPXTG-motif cell wall anchor domain.
  
     0.538
Bcav_4195
Hypothetical protein.
  
     0.452
Bcav_4192
Beta-lactamase domain protein; PFAM: Metallo-beta-lactamase superfamily.
  
     0.440
Bcav_0068
PFAM: Ankyrin repeat.
  
   0.438
Bcav_3582
DoxX family protein; PFAM: DoxX.
  
     0.429
Bcav_2623
Hypothetical protein.
  
     0.426
Bcav_0595
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
  
     0.412
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.