STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0083PFAM: PA domain; Subtilase family; TIGRFAM: LPXTG-motif cell wall anchor domain; Belongs to the peptidase S8 family. (1361 aa)    
Predicted Functional Partners:
Bcav_0082
PFAM: Sugar-specific transcriptional regulator TrmB.
 
     0.864
Bcav_3202
Peptidase S8 and S53 subtilisin kexin sedolisin; PFAM: Subtilase family.
  
   
 0.632
Bcav_0945
PFAM: von Willebrand factor type A domain.
  
     0.520
aspS-2
tRNA synthetase class II (D K and N); Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
  
     0.514
Bcav_0085
PFAM: alpha/beta hydrolase fold.
 
    0.494
Bcav_0084
Conserved hypothetical protein.
       0.436
Bcav_3886
PFAM: Bacterial regulatory proteins, luxR family.
 
     0.405
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.