STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0118PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (285 aa)    
Predicted Functional Partners:
Bcav_0117
PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
    0.758
Bcav_3062
Helix-turn-helix type 11 domain protein; PFAM: HTH domain.
  
     0.435
Bcav_2851
Transcriptional regulator with PAS/PAC sensors, AraC family; PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.430
Bcav_3975
PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
 
    0.417
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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