STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0159PFAM: Amidohydrolase family. (415 aa)    
Predicted Functional Partners:
Bcav_0158
Conserved hypothetical protein.
 
     0.851
Bcav_0156
PFAM: Bacterial protein of unknown function (DUF885).
 
    0.821
Bcav_0164
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
     0.815
Bcav_0157
5,10-methylenetetrahydromethanopterin reductase; PFAM: Luciferase-like monooxygenase.
 
     0.809
Bcav_0155
Hypothetical protein.
       0.788
Bcav_0160
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.
       0.777
Bcav_0161
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily.
       0.777
Bcav_0162
PFAM: Binding-protein-dependent transport system inner membrane component.
       0.777
Bcav_0163
PFAM: Binding-protein-dependent transport system inner membrane component.
       0.777
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
  
  
 0.744
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.