STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0173Lipolytic protein G-D-S-L family; PFAM: GDSL-like Lipase/Acylhydrolase. (340 aa)    
Predicted Functional Partners:
Bcav_0172
Conserved hypothetical protein.
       0.524
Bcav_0171
PFAM: Protein of unknown function (DUF1211).
       0.511
Bcav_3593
Hypothetical protein.
 
 
 0.509
Bcav_0199
Conserved hypothetical protein.
  
     0.478
Bcav_3394
Metallophosphoesterase; PFAM: Calcineurin-like phosphoesterase.
  
    0.469
Bcav_2555
PFAM: PHP domain.
 
     0.457
Bcav_3617
Hypothetical protein.
  
 
 0.444
Bcav_3932
Hypothetical protein.
  
 
 0.444
Bcav_2270
Conserved hypothetical protein.
 
 
 
 0.416
Bcav_3784
Conserved hypothetical protein.
  
     0.411
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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