STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0436PFAM: Binding-protein-dependent transport system inner membrane component. (292 aa)    
Predicted Functional Partners:
Bcav_0435
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.959
Bcav_0785
PFAM: ABC transporter; TOBE domain.
 
 0.932
Bcav_1098
PFAM: ABC transporter; Belongs to the ABC transporter superfamily.
 
 0.916
Bcav_2554
PFAM: TOBE domain; ABC transporter.
 
 0.903
Bcav_1681
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.818
Bcav_3713
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.817
Bcav_0571
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.815
Bcav_3942
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.810
Bcav_3676
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 
 0.802
Bcav_0128
PFAM: Binding-protein-dependent transport system inner membrane component.
 
   0.798
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.