STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0469PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence. (554 aa)    
Predicted Functional Partners:
Bcav_0470
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.960
Bcav_0471
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.960
Bcav_1796
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.833
Bcav_3500
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.832
Bcav_1795
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.829
Bcav_3499
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.829
Bcav_0162
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.795
Bcav_0472
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: phosphonate C-P lyase system protein PhnK; Belongs to the ABC transporter superfamily.
 
  
 0.795
Bcav_3450
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.742
Bcav_3451
PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.741
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.