STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0582PFAM: Major Facilitator Superfamily. (432 aa)    
Predicted Functional Partners:
Bcav_0581
Hypothetical protein.
 
     0.944
Bcav_0580
PFAM: Protein of unknown function (DUF1116).
 
     0.943
Bcav_0579
PFAM: Bacterial FdrA protein.
 
     0.901
Bcav_0583
PFAM: Amino acid kinase family; TIGRFAM: carbamate kinase; Belongs to the carbamate kinase family.
 
     0.766
Bcav_0584
PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
 
     0.708
Bcav_0578
PFAM: Major Facilitator Superfamily.
 
    
0.633
Bcav_0585
Bifunctional deaminase-reductase domain protein; PFAM: RibD C-terminal domain.
       0.469
Bcav_0586
PFAM: alpha/beta hydrolase fold.
     
 0.442
Bcav_0577
Pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme.
 
     0.432
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.