STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0619PFAM: Type II/IV secretion system protein. (412 aa)    
Predicted Functional Partners:
Bcav_2789
PFAM: Bacterial type II secretion system protein F domain.
 
  
 0.842
Bcav_0618
Conserved hypothetical protein.
       0.799
Bcav_2790
PFAM: Bacterial type II secretion system protein F domain.
  
 0.588
Bcav_0620
Hypothetical protein.
  
  
 0.524
Bcav_0621
PFAM: Bacterial type II secretion system protein F domain.
  
  
 0.524
Bcav_0617
Putative PAS/PAC sensor protein; PFAM: PAS fold; GAF domain; Stage II sporulation protein E (SpoIIE); TIGRFAM: PAS domain S-box.
  
    0.498
Bcav_0901
PFAM: SAF domain; TIGRFAM: Flp pilus assembly protein CpaB.
  
  
 0.459
Bcav_2787
PFAM: TadE-like protein.
  
  
 0.454
Bcav_0622
Hypothetical protein.
     
 0.444
lexA
SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
   
 0.406
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.