STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_0945PFAM: von Willebrand factor type A domain. (647 aa)    
Predicted Functional Partners:
Bcav_0946
Transposase IS3/IS911 family protein; PFAM: Transposase.
 
    0.773
Bcav_0938
TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
     
 0.625
Bcav_0940
PFAM: Bacterial extracellular solute-binding protein.
 
     0.585
Bcav_0947
Beta-N-acetylhexosaminidase; PFAM: Glycosyl hydrolase family 20, catalytic domain.
       0.575
Bcav_3098
Transcriptional regulator, SARP family; PFAM: Bacterial transcriptional activator domain; Transcriptional regulatory protein, C terminal.
 
   
 0.572
Bcav_0943
Glycoside hydrolase clan GH-D; PFAM: Melibiase.
       0.545
Bcav_0944
Hypothetical protein.
       0.545
Bcav_0939
Hypothetical protein.
       0.531
Bcav_0941
PFAM: Binding-protein-dependent transport system inner membrane component.
       0.531
Bcav_0942
PFAM: Binding-protein-dependent transport system inner membrane component.
       0.531
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.