STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1005PFAM: Glycosyl transferase family 2. (323 aa)    
Predicted Functional Partners:
Bcav_1004
Polysaccharide biosynthesis protein; PFAM: MviN-like protein.
 
  
 0.947
Bcav_0993
PFAM: Glycosyl transferase family 2.
 
     0.764
Bcav_0997
PFAM: PKD domain.
 
    0.755
Bcav_0995
PFAM: Glycosyl transferases group 1; Domain of unknown function (DUF1972).
 
  
 0.752
Bcav_0994
PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.748
Bcav_1001
PFAM: Glycosyl transferases group 1.
 
  
 0.726
Bcav_1003
Capsular exopolysaccharide family; PFAM: Chain length determinant protein; TIGRFAM: capsular exopolysaccharide family.
 
   
 0.668
Bcav_1000
Parallel beta-helix repeat protein.
  
     0.663
Bcav_0992
PFAM: Cytidylyltransferase; TIGRFAM: cytidyltransferase-related protein domain; glycerol-3-phosphate cytidylyltransferase.
 
     0.494
Bcav_3119
PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.474
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.