STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcav_1071Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix. (99 aa)    
Predicted Functional Partners:
Bcav_1070
PFAM: NmrA-like family.
 
     0.839
Bcav_2081
Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix.
  
     0.762
Bcav_3963
Transcriptional regulator, HxlR family; PFAM: HxlR-like helix-turn-helix.
  
     0.746
Bcav_1069
TIGRFAM: conserved hypothetical protein TIGR03086; uncharacterized Actinobacterial protein TIGR03083.
       0.613
Bcav_1741
Hypothetical protein.
   
    0.613
Bcav_1067
PFAM: Protein of unknown function (DUF503).
       0.531
Bcav_1068
Abortive infection protein; PFAM: CAAX amino terminal protease family.
       0.531
Bcav_1073
Methyltransferase type 12; PFAM: Methyltransferase domain.
       0.460
Bcav_1066
PFAM: Phosphotransferase enzyme family.
       0.434
Your Current Organism:
Beutenbergia cavernae
NCBI taxonomy Id: 471853
Other names: B. cavernae DSM 12333, Beutenbergia cavernae DSM 12333, Beutenbergia cavernae str. DSM 12333, Beutenbergia cavernae strain DSM 12333
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.